Publications

Archaea express circular isoforms of IS200/IS605-associated ωRNAs

Beatriz A Picinato, Vinícius H Franceschini-Santos, Lívia S Zaramela, Ricardo ZN Vêncio, Tie Koide

Frontiers in Microbiology

10/2025

A genome-scale atlas reveals complex interplay of transcription and translation in an archaeon

Alan PR Lorenzetti, Ulrike Kusebauch, Lívia S Zaramela, Wei-Ju Wu, João PP de Almeida, Serdar Turkarslan, Adrian LG de Lomana, José V Gomes-Filho, Ricardo ZN Vêncio, Robert L Moritz, Tie Koide, Nitin S Baliga

mSystems

03/2023

Low Salt Influences Archaellum-Based Motility, Glycerol Metabolism, and Gas Vesicles Biogenesis in Halobacterium salinarum

Evelyn Ayumi Onga, Ricardo ZN Vêncio, Tie Koide

Microorganisms

12/2022

Halobacterium salinarum and Haloferax volcanii Comparative Transcriptomics Reveals Conserved Transcriptional Processing Sites

Amr Galal Abd El-Raheem Ibrahim, Ricardo ZN Vêncio, Alan PR Lorenzetti, Tie Koide

Genes

06/2021

The Primary Antisense Transcriptome of Halobacterium salinarum NRC-1

João Paulo Pereira de Almeida, Ricardo ZN Vêncio, Alan PR Lorenzetti, Felipe Ten-Caten, José Vicente Gomes-Filho, Tie Koide

Genes

04/2019

Internal RNAs overlapping coding sequences can drive the production of alternative proteins in archaea

Felipe Ten-Caten, Ricardo ZN Vêncio, Alan Péricles R Lorenzetti, Livia Soares Zaramela, Ana Carolina Santana, Tie Koide

RNA Biology

09/2018

Development of New Modular Genetic Tools for Engineering the Halophilic Archaeon Halobacterium salinarum

Rafael Silva-Rocha, Marjorie Cornejo Pontelli, Gilvan Pessoa Furtado, Livia Soares Zaramela, Tie Koide

PLoS One

06/2015

Sense overlapping transcripts in IS1341-type transposase genes are functional non-coding RNAs in archaea

José Vicente Gomes-Filho, Livia Soares Zaramela, Valéria Cristina da Silva Italiani, Nitin S Baliga, Ricardo ZN Vêncio, Tie Koide

RNA Biology

05/2015

Transcription Start Site Associated RNAs (TSSaRNAs) Are Ubiquitous in All Domains of Life

Livia S Zaramela, Ricardo ZN Vêncio, Felipe Ten-Caten, Nitin S Baliga, Tie Koide